Index

A

assign_properties() (in module nichesphere.tl)

C

calculate_LR_CT_pair_scores_dir() (in module nichesphere.comm) catNW() (in module nichesphere.comm) cellCatContained() (in module nichesphere.coloc) (in module nichesphere.comm) (in module nichesphere.tl)

cells_niche_colors() (in module nichesphere.tl) colocNW() (in module nichesphere.coloc)

D

diffCcommStats() (in module nichesphere.comm)

diffColoc_test() (in module nichesphere.coloc)

E

equalizeScoresTables() (in module nichesphere.comm)

G

get_pairCatDFdir() (in module nichesphere.tl) get_spot_ct_props() (in module nichesphere.tl) getColocFilter() (in module nichesphere.tl)

getColocProbs() (in module nichesphere.coloc) getDiffComm() (in module nichesphere.comm) getExpectedColocProbsFromSCs() (in module nichesphere.tl)

L

lr_ctPairScores_perCat_dir() (in module nichesphere.comm)

M

module nichesphere.coloc nichesphere.comm nichesphere.tl

N

nichesphere.coloc module nichesphere.comm module

nichesphere.tl module

O

OvsE_coloc_test() (in module nichesphere.coloc)

P

PIC_BGdoubletsOEratios() (in module nichesphere.tl) plotDiffCcommStatsHM() (in module nichesphere.comm)

processCTKRoutput() (in module nichesphere.tl) pval_filtered_HMdf() (in module nichesphere.tl)

R

reshapeColoc() (in module nichesphere.coloc)

S

spatialCTPlot() (in module nichesphere.coloc)

spatialNichePlot() (in module nichesphere.coloc) spatialSingleCTPlot() (in module nichesphere.coloc)

U

unique() (in module nichesphere.comm) (in module nichesphere.tl)