Index A | C | D | G | L | O | P | R | S | U A assign_properties() (in module nichesphere.tl) C calculate_LR_CT_pair_scores_dir() (in module nichesphere.comm) catNW() (in module nichesphere.comm) cellCatContained() (in module nichesphere.coloc) (in module nichesphere.comm) (in module nichesphere.tl) cells_niche_colors() (in module nichesphere.tl) colocNW() (in module nichesphere.coloc) colocNW_old() (in module nichesphere.coloc) community_edge_stats() (in module nichesphere.niche_stats) community_edge_stats_df() (in module nichesphere.niche_stats) community_edge_weight_distributions() (in module nichesphere.niche_stats) community_signed_weight_distributions() (in module nichesphere.niche_stats) compute_network_stats() (in module nichesphere.tl) compute_sc_spatial_knn_coloc_matrix() (in module nichesphere.coloc) compute_sc_spatial_radius_coloc_matrix() (in module nichesphere.coloc) D diffCcommStats() (in module nichesphere.comm) diffColoc_test() (in module nichesphere.coloc) downsample_class() (in module nichesphere.tl) G get_pairCatDFdir() (in module nichesphere.tl) get_PIC_BG_OEratios_DF() (in module nichesphere.tl) get_spatial_radius_BG_OEratios_DF() (in module nichesphere.tl) get_spatial_radius_BG_OEratios_DF_old() (in module nichesphere.tl) get_spot_ct_props() (in module nichesphere.tl) getColocFilter() (in module nichesphere.tl) getColocProbs() (in module nichesphere.coloc) getDiffComm() (in module nichesphere.comm) getExpectedColocProbsFromSCs() (in module nichesphere.tl) L lr_ctPairScores_perCat_dir() (in module nichesphere.comm) O OvsE_coloc_test() (in module nichesphere.coloc) OvsE_coloc_test_adjPval() (in module nichesphere.coloc) P pairwise_ranksums_int_ext() (in module nichesphere.niche_stats) PIC_BGdoubletsOEratios() (in module nichesphere.tl) PIC_BGdoubletsOEratios_parallel() (in module nichesphere.tl) plot_custom_sankey() (in module nichesphere.sankey_plot) plot_internal_external_boxplots() (in module nichesphere.niche_stats) plot_top_stats() (in module nichesphere.tl) plotDiffCcommStatsHM() (in module nichesphere.comm) processCTKRoutput() (in module nichesphere.tl) pval_filtered_HMdf() (in module nichesphere.tl) R reshapeColoc() (in module nichesphere.coloc) S spatialCTPlot() (in module nichesphere.coloc) spatialNichePlot() (in module nichesphere.coloc) spatialSingleCTPlot() (in module nichesphere.coloc) U unique() (in module nichesphere.comm) (in module nichesphere.tl)
