Tutorials
In our first example we will use data from the Myocardial Infarction atlas from Kuppe, C. et. Al., 2022 to find differential co-localization domains related to ischemia. The data you’ll need to run the tutorials can be found here: https://doi.org/10.5281/zenodo.15790389
Notebooks:
NicheSphere results can be used for condition to condition trajectory inference with PILOT https://github.com/CostaLab/PILOT .
Notebooks:
