Installation

Prerequisites

Before installing, ensure you have the following:

• Python > = 3.10 < = 3.12

• pip (Python package manager)

• pygraphviz . We recommend installing it via conda:

conda install --channel conda-forge pygraphviz

Standard Installation

The easiest way to install NicheSphere is directly from PyPI:

pip install NicheSphere

From GitHub (Development Version)

If you want to install the latest development version from the source:

pip install git+https://github.com/CostaLab/NicheSphere@dev