nichesphere.tl.get_spot_ct_props

nichesphere.tl.get_spot_ct_props(spot_cell_props, sc_ct)

Get cell type proportions per spot by summing the probabilities of cells of the same kind in each spot

Parameters:

• spot_cell_props (pd.DataFrame) – Dataframe containing probabilities of mapping each cell to each spot (spot ids = index , cell ids = columns)

• sc_ct (pd.Series) – Series of cell type per cell with cell ids as indexes

Returns:

spot_mapped_cts – Dataframe containing probabilities of mapping each cell type to each spot (spot ids = index , cell types = columns)

Return type:

pd.DataFrame