nichesphere.coloc.diffColoc_test

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nichesphere.coloc.diffColoc_test#

nichesphere.coloc.diffColoc_test(coloc_pair_sample, sampleTypes, exp_condition, ctrl_condition)#

Differential co-localization test with table of scores and p-values as output

Parameters:

  • coloc_pair_sample (pd.DataFrame) – coloc per cell type pair per sample table

  • exp_condition (string) – non control phenotype to test

  • ctrl_condition (string) – control phenotype

  • sampleTypes (pd.DataFrame) – dataframe with sample names and sample types columns named “sample” and “sampleType”

Returns:

df – Dataframe of ranksums test statistic and p-value per cell type pair

Return type:

pd.DataFrame

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