nichesphere.tl.cells_niche_colors

nichesphere.tl.cells_niche_colors(CTs, niche_colors, niche_dict)

Make dataframe of cell types with their corresponding niches and colors

Parameters:

• CTs (pd.Series or list) – list of cell types

• niche_colors (pd.Series) – Series of colors in hexadecimal format with niche names as index

• niche_dict (dictionary) – Dictionary with niche names as keys and cell types as elements

Returns:

niche_df – Dataframe of cell types with their corresponding niches and colors

Return type:

pd.DataFrame