nichesphere.tl.pval_filtered_HMdf

nichesphere.tl.pval_filtered_HMdf(testDF, oneCTinteractions, p, cell_types)

Get dataframe for scores heatmap from dataframe obtained from diffColoc_test()

Parameters:

• testDF (pd.DataFrame) – dataframe with cell pairs as indexes and columns ‘statistic’ and ‘p-value’ (often resulting from diffColoc_test())

• oneCTinteractions (list) – list of single cell interactions (celltype-celltype)

• p (float) – threshold p-value to filter

• cell_types (pd.Series or list) – list/series of cell types

Returns:

testHM – Dataframe of cell types x cell types with significant ‘statistic’ values

Return type:

pd.DataFrame