nichesphere.comm.getDiffComm

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nichesphere.comm.getDiffComm#

nichesphere.comm.getDiffComm(diffCommTbl, pairCatDF, ncells, cat)#

get the differential communication scores for a specific LR category

Parameters:

  • diffCommTbl (pd.DataFrame) – differential communication scores dataframe of cell pairs (or groupings) x LR categories (obtained with plotDiffCcommStatsHM function)

  • pairCatDF (pd.DataFrame)

  • ncells (int) – number of cells or groups

  • cat (str) – LR category to be tested

Returns:

x_chem – cells x cells or groups x groups dataframe of differential communication scores for a specific LR category

Return type:

pd.DataFrame

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