comm module

comm module#

Focused on differential communication

calculate_LR_CT_pair_scores_dir

Get cell communication scores per cell type pair per LR pair by summing that LR pair scores for that cell type pair.

catNW

(Differential) communication network

cellCatContained

Check if a cell group (niche/type/category) is contained in a cell type pair

diffCcommStats

Differential cell communication per LR category (eg: biological process)

getDiffComm

get the differential communication scores for a specific LR category

lr_ctPairScores_perCat_dir

Calculate cell communication scores per ligand category from a database

plotDiffCcommStatsHM

Plot heatmap of differential cell communication statistics

unique

get unique elements in array without re-sorting