Installation

Prerequisites

Before installing, ensure you have the following:

• Python > = 3.10 < = 3.12

• pip (Python package manager)

• pygraphviz . You can install it running this command in your terminal:

conda install --channel conda-forge pygraphviz

From GitHub

To install NicheSphere, run this command in your terminal:

pip install git+https://github.com/CostaLab/Nichesphere#subdirectory=nichesphere