Installation ============ Prerequisites ------------- Before installing, ensure you have the following: * Python > = 3.10 < = 3.12 * pip (Python package manager) * pygraphviz . You can install it running this command in your terminal: .. code-block:: bash conda install --channel conda-forge pygraphviz From GitHub ----------- To install NicheSphere, run this command in your terminal: .. code-block:: bash pip install git+https://github.com/CostaLab/Nichesphere#subdirectory=nichesphere